NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214169_100511

Scaffold Ga0214169_100511


Overview

Basic Information
Taxon OID3300020677 Open in IMG/M
Scaffold IDGa0214169_100511 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 13JUN2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3007
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008351Metagenome / Metatranscriptome334Y
F013610Metagenome / Metatranscriptome269N
F018161Metagenome / Metatranscriptome236N
F025270Metagenome / Metatranscriptome202N

Sequences

Protein IDFamilyRBSSequence
Ga0214169_1005112F025270N/AMNQETLENGDTLRSLRVRQATKVSKYKLKRQWQKIAAEALAMLNDVKTNEINTSEHNMAVFNEIFIKIQELRRLDPEKEINQYALAQAVITKYNCSLCLPTDDSDYEYEPANS
Ga0214169_1005113F013610N/AMETSTSTDNPEKIQKIEKQKKLVADLFSTLNLVFTQTKLGVERSDLLLRAVHQFKADILKIDPYWKLISWPHITIGRIFCSIDAIIIEDKWDCETNKFLFNEIKDAMRKLRRFNNYWQLTEEDAITYTGQVSAGDKTRGYRDTLEELERLIIEV
Ga0214169_1005114F018161N/AMSELEGKPDYSARQQVVRKIYKVLSRINCIPPFEDTINFRHLQRLHELMRELKSLNPEYPVTDVVQNSELNILKNLDRIQTTRSWDDAGNKLVYINIQGEISKIRKFHPDWDVDLDCIYRYHICRCLRCKSEGFLCTQHVLDSSNEISSPQSDTSEGEKPFPALNSKH
Ga0214169_1005115F008351N/AMESDQETELPEKCSEELVHTVRESVEKLFLLVNTEFSRPSASNEEEDFSLLKQICEAKANILKDNPYWSAFDHTTLLSTKALGRLDWLDAEGPWDGVRNIENYKVFKEALRELRECNPNWKLEEQEIIRRVRCSYCGTVKSIPDRKTPLENNPGKARS
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