NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214169_103237

Scaffold Ga0214169_103237


Overview

Basic Information
Taxon OID3300020677 Open in IMG/M
Scaffold IDGa0214169_103237 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 13JUN2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1043
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014232Metagenome / Metatranscriptome264N
F030350Metagenome / Metatranscriptome185N

Sequences

Protein IDFamilyRBSSequence
Ga0214169_1032371F030350N/AFSHRLESLKIQRENFVRIEKVSIGKLSVQYCLTPIFRDRLNKNLTLLHRLEDLIVDLESLYQYAKDKLEEKERINVGVTEVRKISPYEYKDPREVNFKIPRVKDETKVVMRVRNPTYLDFLYRPQVN
Ga0214169_1032372F014232AGGMSQEKPEISSEVITKADTSEDCGHEPHGCTCPPSAEYEKSIEIRSLTNLIRLVYSVPLVNGLISYKPLERIWNSKKVIRKIDPGWILADKVTLLEHQVLNQIDTIDISVPWDDVENKSRYLDLYKNIIRLKAIHPNWEMYLEDSKNHHFCKCHQCSEVKRRYQEMLDATSSEESNLE
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