NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214239_100188

Scaffold Ga0214239_100188


Overview

Basic Information
Taxon OID3300020688 Open in IMG/M
Scaffold IDGa0214239_100188 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 12AUG2008 hypolimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)13506
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (74.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011059Metagenome295Y
F051645Metagenome143Y
F061482Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0214239_10018819F051645N/AVVYSLILDLGESMEKSTSRSINDRFYTPLLYVVKKHGSLNASAQALGISQQRIFHWNKVKAIPDEWKVKLHKKYGVPYKSFFEQHE
Ga0214239_10018820F061482N/AMIKWNLIQQGEVIMGNYDSWLQSGAYDNEDEEIYIENRIPELMTTKDYDPSDTSHMAEAISEASKDDQEIIRDYIEQRDWAKLGQKLYVMSYNYMEHFAQMEAQREVSNGL
Ga0214239_1001885F011059N/AMVRKREKMSKMTYDQWQSRYLTEESSNYDREFRFKFLSDYLLNPNLAAICRTHNVPYDTALSWKKRDWWHEMAEEILANHKEELLAKQRAILKRTYDELGDRLVNGDEQYVPNEGHVRVKVRANHLATIADTTLKANQLLQGKATQISHVTIESLADKLRTITQEATVIDVTPEPLLDDTKG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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