NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214210_1002514

Scaffold Ga0214210_1002514


Overview

Basic Information
Taxon OID3300020689 Open in IMG/M
Scaffold IDGa0214210_1002514 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 03AUG2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2404
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044926Metagenome / Metatranscriptome153N
F066726Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0214210_10025141F066726N/AMATSEEEKSCSGLVPHLKLLRVITLGNLIKLQYTREEYPNLSLGNLFSQLIDIVFEVVEELSFRFEQEKLLTPFLEPVKPFFEQVFALTYPNLNPFREALVPIYREKMFNKKEFLKEPSCIEPTLRRIGQGAFITGWILTEGSATFFKSQKSTFDNICESLHYFGKILMVLNKVQEILEISRAVLEKKVLRRKVVIPPESTEEQIQELVQIFNNHISSIYENCQAHHKKLFKTLPLEIDCLILKIYVSSSKSLGATAANSEQNCLLFQEAKELKLTSRTCKVGEWPYSKLIDF
Ga0214210_10025142F044926GAGVDSIAEIPLPATADCTHEEASNKIEDLKGLPLNVEKWIRIKDEKRKLKLLQRAQRIYTCRDKTEDKKRVFNFGILTSLKSEFCEREISDFTLWKVVTIVKLIYTMVSILESISFFFLIYKVIG
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