NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214221_1007309

Scaffold Ga0214221_1007309


Overview

Basic Information
Taxon OID3300020699 Open in IMG/M
Scaffold IDGa0214221_1007309 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 09AUG2007 hypolimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1305
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044899Metagenome153N
F045529Metagenome152N

Sequences

Protein IDFamilyRBSSequence
Ga0214221_10073091F044899N/AVKKRKVNRHGLVTLTNGVVSMRELGLSIAVPSKCRDDDALTLFNATLSWGQAYALCTLVMCGKDHPVEKAKDMETRMKIMYSAQPYSISEEMLNEILEADPEQRLPYLHGMSKSAQQKLRYALYGQVGNLFNEKVFTKTGVQPSEMVKLHLGLKDLVPERGLMDM
Ga0214221_10073092F045529AGGLHSWKGKFANFARPYFAPYEITKRTKQADAKVLSEELSLSSCPLGHQYDPDLHDAVSHLRILDGSLPEHPKHGRAVNFFAPEGTAKYWVKSSSPVFGYFFYYTLDMAICPYLASIFGMPIWHPTKEAEVD
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