NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214238_1029751

Scaffold Ga0214238_1029751


Overview

Basic Information
Taxon OID3300020707 Open in IMG/M
Scaffold IDGa0214238_1029751 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 05AUG2008 hypolimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)608
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera → unclassified Thauera → Thauera sp. CAU 1555(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012869Metagenome / Metatranscriptome276Y

Sequences

Protein IDFamilyRBSSequence
Ga0214238_10297511F012869N/ARRVVMPANNRGKKMIAIHTKYLAPTNSNGARIKAYTAGGMGYKGFTATIPYPYGLEGAECHFKAVQELVKKNNLDWNLDGMRYGDSADGKGFAFCFDCSQVNNSYNV
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