Scaffold Ga0214198

Basic Information
Taxon OID	3300020710 Open in IMG/M
Scaffold ID	Ga0214198_1000076 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - 20SEP2008 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300020710 Open in IMG/M

Scaffold ID

Ga0214198_1000076 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, WI - 20SEP2008 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	29262
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	34 (75.56%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

29262

Total Scaffold Genes

45 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

34 (75.56%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008619	Metagenome	330	Y
F024113	Metagenome / Metatranscriptome	207	Y
F055534	Metagenome	138	Y
F066311	Metagenome	126	N
F087091	Metagenome	110	Y
F096492	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214198_100007611	F008619	GAG	MAFQNIFEIQQKMTVNNRRMVGQQVTRAGYMTTAQYLTAVPWVFTVIPHNFLYYPQVRDIIQGIDNLDRQLPETIIFNSSLLSWFTVMGGTATAATLNGTPAANTQTLALNSNGTFKAGDFIMINGYSYKITADSTGASVGIHRPLIGSPTSGTTVYVGNACTFNVVAEQCPTYSLTPMTNGAFVEWSGPFVFREYVTG
Ga0214198_100007615	F024113	GGA	MAIFNKNSLAQVSGFDNPILAGELVWDQQTYWNLSFTNDVGPVNLTGATIDAQIVRRELSNLNDTRYGLTFDIADYVPTPAAITLTITNINATAGTCTLVIDSTAWGLMATDPELEINANNPVGYSGRVKVSFPASGPTPADDMIIFLLFIVRSDGVVVL
Ga0214198_100007625	F066311	GAGG	MISWFFEGLFYYIALLAFIAGLALYGVSYFAKLLPVIAAYALMMQIGGMVLAVGGGYFVADHKGYERRVAEDKAEIDRLNAEAREKEVQMAQAIKEKTAALRKATNAINQKQSDTFKRIDSGELRFPTSCPVQADSSTGTTGGNPSNGTESERQAVKDIVTIAAEGDIAITRLNACIAQYNNVRETINAGVK
Ga0214198_10000763	F096492	N/A	MAIARYENINVNRVTAGVDSIGQQTTTITLAFQTRALVQDVRDSMLAAKDDRAYTKQVRFVLNFTPNTLNVSLNQFQYSVNWRNKDYKILDVLESNDRMNVTFVCYRNDPITSV
Ga0214198_100007631	F087091	AGGA	MILSNSYPTEVYVSDMGYFVIKQDCFECGHQTQFLFTPDQTKLLFNLLPDFLKEQQDKWTGLHSPHESTNDE
Ga0214198_100007634	F055534	GGAG	MRDHYNFEELEAARILDLVRMGDKTIPWTVITWALWCLGDAVGQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214198_1000076

Overview

Ecosystem & Geography

Associated Families

Sequences