NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214255_1019299

Scaffold Ga0214255_1019299


Overview

Basic Information
Taxon OID3300020712 Open in IMG/M
Scaffold IDGa0214255_1019299 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 03AUG2009 hypolimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)838
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F088001Metagenome109N
F091105Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0214255_10192991F091105AGGAMIQQTGTLGHISAISPTGESFESQYGTMYVHNIEFASGTKGTCNSKSPLPKYKVGDSVYFTSSPDKKTGANKIKILGTETFHAKAGIRAENYKQAEQIGFASASKPAYNPDGAALGNAKNIAKDIVIHNARVQNVILKPDELENGDFQEFVRIVLKTQ
Ga0214255_10192992F088001GGAMKPELVKEIIQLCVFVPCFLIIAWAISDFRAYKKELRENREWLDRYLAGKSKTNPTIKRK
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