NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214207_1000010

Scaffold Ga0214207_1000010


Overview

Basic Information
Taxon OID3300020716 Open in IMG/M
Scaffold IDGa0214207_1000010 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)66312
Total Scaffold Genes91 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)79 (86.81%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000843Metagenome / Metatranscriptome864Y
F002405Metagenome562Y
F012448Metagenome / Metatranscriptome280Y
F019309Metagenome / Metatranscriptome230Y

Sequences

Protein IDFamilyRBSSequence
Ga0214207_100001038F002405GAGMIIEPEWVFPFEGMDVGDSFFIPTLRFAELIYALDCGAKRAKIRVKSYVSIKDDCIGVRTWRIR
Ga0214207_100001041F000843N/AMALYQITPNQLPKVWPIVAPLLQKAIDVDPDSNTIEQTEYSVRTGKTFLLIWDEPEVGITGACTVEFFDYPRERVAHVNLMGGKGIVRQHVFEEAKNWMRLHGATKAQCWTKGSLVKMYEKMGMENTHQVMRIKL
Ga0214207_100001043F012448AGGAMDIEKLRKTHHTTPVELDYVEFIEADDIWIKAYSVALTNTIITQHVHVHDHITLVSGGSIEAWQDGECLGQFNAPAVIRIAAGKKHAFKALTDNVALCCIHNLRGTGLESPEIEGVVHANPKR
Ga0214207_100001087F019309N/AMSYETSKLTELVAQKVDEKVRQLEEALGSRSAKDYAEYCAMCGEITGLLTVRRYITDLTKQIEESDD
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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