NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214207_1000028

Scaffold Ga0214207_1000028


Overview

Basic Information
Taxon OID3300020716 Open in IMG/M
Scaffold IDGa0214207_1000028 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)46121
Total Scaffold Genes79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)71 (89.87%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002689Metagenome / Metatranscriptome536Y
F016143Metagenome249Y
F036523Metagenome169Y
F050095Metagenome145N
F072099Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0214207_10000282F036523AGGAMNYGSPITGTLTGATAVVSLPNGAIQYPATLILNSSNGSRAIQLSFDNGTTYYSAVTPTLSETGQLVYALTYPATTVKFTGAANDTYTIL
Ga0214207_100002830F072099AGGAMLQLTRYNKPTPIIVLTVEAGFPLVEVAGKRLDTLREDFYDNAVNCMNRRPFSPIVSPYDIALSGGEPYGNWK
Ga0214207_100002846F050095AGGAMDWIDIIVGGIVAIFIVGGCLALYADAVNHPWGEDE
Ga0214207_100002869F016143AGGAGMIRHKDNEHIWTPAGTDVTVRWKTLGWIPPSELPEYQAKWKYFQELPLRKLDDKAKEEYELVMKKAKVARIR
Ga0214207_100002876F002689AGGMATIDQTDARLSTHEEICALRYEVINARLKRIEQIMITSAGLMICSMGGAVFTFLAHVK
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