NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214207_1000285

Scaffold Ga0214207_1000285


Overview

Basic Information
Taxon OID3300020716 Open in IMG/M
Scaffold IDGa0214207_1000285 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)15965
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (68.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009462Metagenome / Metatranscriptome317Y
F026556Metagenome / Metatranscriptome197Y
F026795Metagenome / Metatranscriptome196Y
F070810Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0214207_100028514F026795AGGAMAKNYKDINYFETRPDIVKLFDDLEAFHDWCRLELCEFNEAHLYNRESWQWRNFDKTRRPKKPFTGERKPYLGKNPRPYNERISN
Ga0214207_100028519F009462AGGAGMQVEQLHESIKDTYKEIVIKEQEGFRLVLKKHQVLSPKGLFALDLEQQHLKDGEIVDSCTYNFFMDKEELQTLASGLTA
Ga0214207_100028521F026556GGAGGMASLTGSIVKLIFGIALILIAVIFGPIVGIWSLNTLFPVLNIPFTWQTWLAFNCLFGGTIASRLKK
Ga0214207_100028524F070810AGGMETTNTQWEIRIPWHNQDNNWWNETCADVVEVFGLPGERYTYHPRYEDMMFYFNSKKDYQLCKILLSDRI
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