NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214178_1003095

Scaffold Ga0214178_1003095


Overview

Basic Information
Taxon OID3300020718 Open in IMG/M
Scaffold IDGa0214178_1003095 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 17SEP2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3196
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012647Metagenome / Metatranscriptome278N
F015181Metagenome / Metatranscriptome256N
F082118Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0214178_10030951F012647AGAAGMEEDRAQEHLIFYINEFYAIKNITMDLFLLFRKSEAEITKGKEAIEFRIRGRISFLTHSMRDRTSLGADYALASIKHWTNLLKICQKEQTQALKMLDDLYQTYKKVSRVPTSQSIPVKEHAERMDTNDNN
Ga0214178_10030953F082118N/AMLAQKSQRILELEAQQVELRQNQLNVVAQLQERNIDPEEEALLKEQLELLSKLEVPIHMLLDRYKGKERKEKRKRTSRRQTIRVI
Ga0214178_10030955F015181N/ATLIEESKKKDFIREIQLENFKSEKRRFLVKLLVQNTELKLACKEEKGIADYVTEKFFQTKTLDISDEQVLQQEIVTFQQKLGRIAQLKEKVKIDKGEVANELFKTKTSERMSVILKELSTLLYETNIRLSNSGLMYNYIINKLFKLVDNGKPAYQAEAMDWTTTYEEK
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