Scaffold Ga0214178_1010238

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0214178_1010238

Scaffold Ga0214178_1010238

Overview

Basic Information
Taxon OID	3300020718 Open in IMG/M
Scaffold ID	Ga0214178_1010238 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - 17SEP2007 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1371
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019636	Metagenome / Metatranscriptome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214178_10102383	F019636	GGA	MSGQMSDGVYNRRPWVAPTADLDISRLPPQDYLGPFQSNAERLMGQSLATWSMTSEEIQRYVRPPLPQVKLFPPRFGYTENEIGIEDLIDLPRRTATTQRVESDFSQTPNTQESSSTNSLGSTI

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