NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214178_1022144

Scaffold Ga0214178_1022144


Overview

Basic Information
Taxon OID3300020718 Open in IMG/M
Scaffold IDGa0214178_1022144 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 17SEP2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)836
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009326Metagenome / Metatranscriptome319N

Sequences

Protein IDFamilyRBSSequence
Ga0214178_10221441F009326N/ASIATCNKLFENMTLFNGEHKDTKIIGTVNGKNFYWKLDTGSAVTCMNINAFETAFGKLKEKKKECKIDIFIRNRKCTHTVTIADESSENIFGIDFLQKFRLQLDSKTEGITFQSAPSRALFATKNFTIPPFATTLVQARTFQNIDSQLNYIADIGAPKQPLISGLSSLVSFDHRNQCTMPIQNCAPYEINVSTGDILGILNTEKEDPIPLDDNSLATICEQIHQRLPKVKKRAWTRKEIEDRCHLGAPEPYRSQYVDILVKHQAAISLDKYDLGLAKN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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