NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214202_1009071

Scaffold Ga0214202_1009071


Overview

Basic Information
Taxon OID3300020728 Open in IMG/M
Scaffold IDGa0214202_1009071 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 03JUN2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1871
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038078Metagenome / Metatranscriptome166N
F043767Metagenome / Metatranscriptome155N
F045533Metagenome / Metatranscriptome152N
F045559Metagenome / Metatranscriptome152N

Sequences

Protein IDFamilyRBSSequence
Ga0214202_10090712F043767N/AMENQEQGQSNGHSLFFSRHPSETNAYRRKRLWREKALEALDLLNHIKLEEIATSEHNIQVYEAIRERLKMLKMIDPERKIHQDTLVETTVIKYDCPMCLPTDDSNYEVEPDS
Ga0214202_10090713F038078N/AMKPVFENRMAAKDERKCTVEMKKLKRESIEKFFSLINFIFFMSEKEDITLLRYLHEAKAKVLANSEYWSLVDYIGMTIGRIFRCIDTINVEEKWDSKNNKEWFHEMIKSMNTLKDLHPQWHLTKQEVDRYSTTCPCSQCSTEKGREDTISSIISKLNI
Ga0214202_10090714F045533N/AMAEKPEDNILSSDQRPANEKEELVYRLLCLINLAFSQVGKRNEDYLVLQQIHETKLKITSIDPSWSFYDSNDYLINKILRYINAINSNKEWNHEDNIKLFTEVRRNMIVLKEHNAYWFIDKNSIESHNPFLCHGCRKLKEEK
Ga0214202_10090715F045559N/AASELRKDVAKENYKYVKLTGISNVINSLCGTGFSNESLMHHRMNRIHVLKWKIKNIDPNWHLTDQVALMEHQILDLLDGIDHMKPWNEIGNKLKYMALFSIVENLRKIHPRWGIHLESLETPEKNHWCKCYKCHEARMQKYKIVIQDNPETERLDESS
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