NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214170_1000065

Scaffold Ga0214170_1000065


Overview

Basic Information
Taxon OID3300020731 Open in IMG/M
Scaffold IDGa0214170_1000065 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)47559
Total Scaffold Genes76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (13.16%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018370Metagenome / Metatranscriptome235Y
F031102Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0214170_100006512F018370N/AMRIHILWCTIRPAQFKSAHSEWIKRADNKENIYTYTAVNWGEHATELSNYLDCKNKDYIITLNTNKIGVCYPSYQLSSNLGIKMGKCDDNDIVIFASDDFMVPQGWDTYLISKLNDKGDVALFVQDGYQLPDSSNMLHPAITIPIMTYGCLKKLNMIIYHPAYNHMFSDVELYDNLKDLNLLYDDRMNDNTIFEHLHYAAGKRPADQADQAYNSKWGEDDLTWQKRKLMSVEDRLKL
Ga0214170_100006535F031102GGAMKEVIKQKYGEPEKSQKSARLTKRVSENAEKKENGKYITKIVDGVKYMVLK
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