NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214170_1000334

Scaffold Ga0214170_1000334


Overview

Basic Information
Taxon OID3300020731 Open in IMG/M
Scaffold IDGa0214170_1000334 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)17764
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (76.74%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002539Metagenome550Y
F020298Metagenome / Metatranscriptome224Y
F021910Metagenome216Y
F028086Metagenome192Y
F059611Metagenome133Y
F060589Metagenome132Y
F086581Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0214170_100033411F028086N/AMTEEKIPFGGTIKVPSDACEEAFFALYPDFFYEGSTALNLWIQSWQAALDHVENKKPVIQLI
Ga0214170_100033414F002539GAGMSNEHIWTASGTDITIRWKMAGWIAPSEIQGYRDKWRYYQNLPLRQLDDAAKEQYEQVLRKAKVLRIK
Ga0214170_100033421F021910AGGAGGMGMSRHDAYYEPDDYDDRSDEIESRTWELMKVGAEYDYKTSGAISEALGDMGIDDAKALQDVIDSGNYEALGRKVISMACDYMERFAKDCAENEIND
Ga0214170_100033427F060589N/AMNEEKYRHQCAVRQLIIYRKQMGLKSFREYVKKSNFSWKLMRDFEEQWLKNNRANQYGEW
Ga0214170_100033432F059611AGGAMKDFSQPYLNAKNLLEAYYKAMIVQDKESAIKIANALVENTLKLEDIAHD
Ga0214170_100033442F020298AGGCGGMTSPNIYVPYPTPQDEQQLQADVSAIVYQPGVPQELQDQYTNMINSPQFVDGVNEAEANSDSMENE
Ga0214170_10003345F086581GGAGMSFELDPVRYGVLWNTVENNEKKLEEMNKKMDKMESKLEELVALANKSRGGFWVGMAMVSGISGFISFIAGLYHQK
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