NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214170_1000337

Scaffold Ga0214170_1000337


Overview

Basic Information
Taxon OID3300020731 Open in IMG/M
Scaffold IDGa0214170_1000337 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)17716
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (53.85%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001008Metagenome / Metatranscriptome807Y
F024484Metagenome / Metatranscriptome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0214170_10003372F024484AGTAGMLTPTNYTTDTTLFQEACSQLPEGGMKTTINQPTGDFFYDPWIIKDEYKGTVWEKLYNSLPVVKGEARIIILDPNQCYQIHADIDDRYHLNILGDNSYLINLVQEIMYPLSQDGIWYDMDASFLHTATNFGRKARVQLVVRKLLKKNKLSKPVEVSLVTSMDNPNHARFLFDNTMSPWLNDANKAGLINNFSQGAVSIKFNIEEDKLESFKRMLPDEFKII
Ga0214170_100033724F001008GAGGMSKAKHKPYQWIDGETADRITSLNLKDYRAYLKKELKQWKKNPKTESNPDGYWLHPDDIVTNMRTIEALDLIISHFPETSDEIK
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