NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214201_1012876

Scaffold Ga0214201_1012876


Overview

Basic Information
Taxon OID3300020732 Open in IMG/M
Scaffold IDGa0214201_1012876 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 29MAY2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1699
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022586Metagenome / Metatranscriptome213N
F042162Metagenome / Metatranscriptome158N
F063335Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0214201_10128761F022586N/AMENTEDKPSLSPDSFYEIIHEDGDLISYEQEKLDKLLDSIIIEVKSTSEPGKEIKEKIQKAVEITEGIISTIGRFVEDATLAEDNIFIGFHEDLQKDAKSSAMKTLDMAEKLRENNFLSLVPVIRNLTTRIEWIEFILSKTSIEQMKNTLENRKAALK
Ga0214201_10128762F042162N/AMSYQILKSKTKEQVENKINPILKEKYQEDIAIKLFKSSSEVIKDSIDEVTKSYYINYPREIKENFIKEVATQVMEWKNKIQERSKSKNITGLDQLLSRKIIDILKEYLRALKEVDIDKRQHELYQVDALASITYYAKIEDLVKSPFSLELCKKNNWIIEIPKSN
Ga0214201_10128763F063335GAGMERQKVEELQKVREERLALERAVMQTCSSSLHPEWLGLTLIKNYHLIEAINKLVRKEKALAAETKVETKEHEENK
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