NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214201_1023072

Scaffold Ga0214201_1023072


Overview

Basic Information
Taxon OID3300020732 Open in IMG/M
Scaffold IDGa0214201_1023072 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 29MAY2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1095
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015058Metagenome / Metatranscriptome257N
F085119Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0214201_10230722F015058N/ALLGLKVKTTMDDSWIYTLNSDIMRKDRERLKGQGIVISNLISEGQNKTDKEKKYLKILEFMNSIEVLVHFAEQALIWTTRSQLRPGTQIPADAVKTLTYNDHESLKQKLGTIAVARASILKRKGLMQFHSLSESGNNPMDPYETEKTIVLMKLEARLLQLEHLYKSLLEIKPVELKIFQ
Ga0214201_10230723F085119GAGMNQTLLSKEDVMILDLLGRVKIKGNTLIEESKKQDFIREIQLENFSSEKRRFLVKLLVQNTELKLACKEEKGIADYVTEKFFQMKTLDISDEQLLQQEIVTFQQKLGRIAQLKEKVKIDKGEVANELFKTKTSERMSVILKELSTLL
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