NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181598_1024003

Scaffold Ga0181598_1024003


Overview

Basic Information
Taxon OID3300020810 Open in IMG/M
Scaffold IDGa0181598_1024003 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041404US metaG (spades assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3463
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED228(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062275Metagenome / Metatranscriptome131N
F076607Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0181598_102400311F076607N/AILEDIEKLHFDYAECKIEMEEFIAGITRLGVDSPADIEEHRLNAEEARYEYKVSQHQNKF
Ga0181598_10240037F062275AGGAMIAHTIDLVGEFKALPTNHEKWWEEYKKGEKFALLIKKKNALPLKEIYKKMYEDGIHYLQLHFEGGHDEGGFDGDFVFLDKDKNPMTIKDLSKYSPTGWIDEYTPLEYTIDKGKDKITQVFEYRNTNYSDVKVTQDWLVNKWYEFGFLEEWGTFAFEGNVYGEVIVSTKDGSYNVDANETFESYESKDFEGKMFDD
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