NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214088_1697166

Scaffold Ga0214088_1697166


Overview

Basic Information
Taxon OID3300020814 Open in IMG/M
Scaffold IDGa0214088_1697166 Open in IMG/M
Source Dataset NameGranular sludge microbial community from anaerobic digester, University of Toronto, Ontario, Canada - UASBVu03_granules megahit
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Toronto
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)813
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Granular Sludge → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location
Location NameUniversity of Toronto, Toronto, Ontario, Canada
CoordinatesLat. (o)43.6629Long. (o)-79.3957Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030981Metagenome183Y
F096529Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0214088_16971662F096529GGAGVKRKDFIEGFEPQIVRIGGKPKVIGYIKGDAFRSVGKYSKHVLYKREGRPPAIAKEAWVYRNLIKPRCRLWEVFDEERNLILRTTIVNFDTHCEEWRHDDLVQLLLEEPFWQVERLGPPKLTQGKLF
Ga0214088_16971663F030981N/AKEMGKVRRCDKRCHTAKGTRCKCWCGGFFHGSAGAANRPALTQGATELLEEHGFRKDETAYLAQEELPMKDLPGVEAR
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