NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214088_1824450

Scaffold Ga0214088_1824450


Overview

Basic Information
Taxon OID3300020814 Open in IMG/M
Scaffold IDGa0214088_1824450 Open in IMG/M
Source Dataset NameGranular sludge microbial community from anaerobic digester, University of Toronto, Ontario, Canada - UASBVu03_granules megahit
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Toronto
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)697
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Granular Sludge → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location
Location NameUniversity of Toronto, Toronto, Ontario, Canada
CoordinatesLat. (o)43.6629Long. (o)-79.3957Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025315Metagenome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0214088_18244501F025315N/AKGNWPLRKVQPALVLIPVIWYLTYAPIHELSHAVGVYLAGGKVVVYKLIPSFWLGEFAGAWIKASGISLSWQQITMTAFPYVLDIVCFVAALVIFRRSFTKNPFLIGLAFMLLCLRPAMDFIFEPIAFFTGDRNDFYALQQIVGPIVIWAFILTSIGLAVYSVTSTLNRLVHFSKQ
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