NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0215015_10078252

Scaffold Ga0215015_10078252


Overview

Basic Information
Taxon OID3300021046 Open in IMG/M
Scaffold IDGa0215015_10078252 Open in IMG/M
Source Dataset NameSoil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Colorado
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4258
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_40CM_2_52_4(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Czos Across The Us

Source Dataset Sampling Location
Location NameHuntingdon County, Pennsylvania, United States
CoordinatesLat. (o)40.6949Long. (o)-77.9199Alt. (m)Depth (m).9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013287Metagenome / Metatranscriptome272N
F030030Metagenome / Metatranscriptome186Y
F042845Metagenome / Metatranscriptome157Y
F046962Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0215015_100782523F013287GGAGMGLSVKPVTLRGATYLRVPGDVAELLRVMASKICSVNFRIDEKECTLTYSFAKSVPDLREEPSDPRLLLAE
Ga0215015_100782526F046962GGAMEEMANSGYPPETTNRTIPQDTMTNDQLRNILAELISSSASLNVRVWLDGVYTDIENAGAHREWMKGREVYFKVEGKVDGQNSLEEEPLRSV
Ga0215015_100782527F042845AGGAGMATRKWKAFLRMNGETVVDSSPDILTEFKAMVEYLNSIGVDYSIVVRVEADQAEHSQTLTMEQPPRRLVTGQTGD
Ga0215015_100782528F030030AGGAGMTKFIMSIGDSAYDILSNEAKNRDVTVQQLLRAVVVPDWIRQNAIGDPPIENRSHRVQSSVYGADPSNSRMLVSPVARLRG
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Institute for Fundamental Biomedical Research
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