NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0215015_10277310

Scaffold Ga0215015_10277310


Overview

Basic Information
Taxon OID3300021046 Open in IMG/M
Scaffold IDGa0215015_10277310 Open in IMG/M
Source Dataset NameSoil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Colorado
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4227
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Czos Across The Us

Source Dataset Sampling Location
Location NameHuntingdon County, Pennsylvania, United States
CoordinatesLat. (o)40.6949Long. (o)-77.9199Alt. (m)Depth (m).9
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010388Metagenome / Metatranscriptome304N
F014490Metagenome262N

Sequences

Protein IDFamilyRBSSequence
Ga0215015_102773102F010388GGAGGVPFVEFPLKEVDLLVHELDNVKPAGSVVMVTPMEDSHHSPCLKEMMAVMVHTTGKDDQPGEIHSIYQYCPHCKIAVRVL
Ga0215015_102773104F014490GGAGGMARTVLELRCISCGVKFERSFEKRRGDPDDSEGEMVRLEGSSCPNKCSGEWFAVEKSHPIRKFKRTFGS

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.