NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0215015_10334351

Scaffold Ga0215015_10334351


Overview

Basic Information
Taxon OID3300021046 Open in IMG/M
Scaffold IDGa0215015_10334351 Open in IMG/M
Source Dataset NameSoil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Colorado
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4575
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Czos Across The Us

Source Dataset Sampling Location
Location NameHuntingdon County, Pennsylvania, United States
CoordinatesLat. (o)40.6949Long. (o)-77.9199Alt. (m)Depth (m).9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011479Metagenome / Metatranscriptome290Y
F017116Metagenome242Y
F020766Metagenome / Metatranscriptome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0215015_103343516F011479AGGVNDLSFDDFVSQSVNETMSKILGTDTWKAINFFFDMKIIAREPEQFAALLDKVFGYTSIVLQKKIGETLLGKVGAVQQTSSNFDFRQILRLAKAKFPRQAIPEALGQ
Ga0215015_103343517F017116AGGTGGMAFNIETAFETFNLVLILVAFGIFARLALKGRSLGNFRFQLSIFLLIWVLSEIPHIVGTLGLIDTRSYTDTGLYLHAVSMGVFALFVGWRSLKIATLHPIPPTGAVSIPTKPPKVLEG
Ga0215015_103343518F020766AGGVDLVTGGIVLFSIMVAAGIVPLIMAFRVKVHSLRILSLLLGLFAIIHGFYHLASGFQQEFLADVVIEPISLLLLVGLGAYYSKVAIT
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