NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0215015_10365889

Scaffold Ga0215015_10365889


Overview

Basic Information
Taxon OID3300021046 Open in IMG/M
Scaffold IDGa0215015_10365889 Open in IMG/M
Source Dataset NameSoil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Colorado
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4654
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Czos Across The Us

Source Dataset Sampling Location
Location NameHuntingdon County, Pennsylvania, United States
CoordinatesLat. (o)40.6949Long. (o)-77.9199Alt. (m)Depth (m).9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013282Metagenome / Metatranscriptome272N
F085527Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0215015_103658892F085527GAGGMVLIVILMSTIIYIWVVPAFTSQTSQDNAGAAYAEKFETVRAQFATYVVSIPETVANCGSQDGSVGCSPSSYLTCGGSVTSPYSGNVVVPVNGVCLITSTVNGNVYVSTGSNLTVVGGTINGGLEANYSSVVTLTNANVYGFTGLYNVQTVNISGSRLNTSGSTSVTTDACCAALYAGGRGYFSMTNTNVTGQVENEVGHNTIVNNNRITGRLEIESADLGQIINNVVGSLDLDQNGTIVIAGNIVNGTAKYGTNGWCGTGNNQISGSTTGTCIGNVEVDVANTGSTPVKFLQVYMTNIPLAGGLSWQLASGNPTQCGSGQSATCTLLPIVIPVGDMAEITMGWTAPSGSFPLPWNYIYFIFVSSHQNYVDGYLYFQQGLGMPLQSRLEQRTCPPCY
Ga0215015_103658894F013282AGAAGMTDKLAGKDDSQRLLGYVESVAKESRKALTLEFNEKHKGIPFNSTGQILRDSLIAWFSRRDKNLRIIAETVNSTKIGEVRAVFGGETKNVRFKVRADATFSVTGGSADSPSYLKELNVSIDRHS
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