Basic Information | |
---|---|
Taxon OID | 3300021046 Open in IMG/M |
Scaffold ID | Ga0215015_11088785 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Colorado |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1119 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Czos Across The Us |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Huntingdon County, Pennsylvania, United States | |||||||
Coordinates | Lat. (o) | 40.6949 | Long. (o) | -77.9199 | Alt. (m) | Depth (m) | .9 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001473 | Metagenome / Metatranscriptome | 688 | Y |
F019896 | Metagenome / Metatranscriptome | 227 | Y |
F036729 | Metagenome / Metatranscriptome | 169 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0215015_110887851 | F019896 | N/A | EYASRLKTYDAPIPVKIRQCEPGVAEVGPGKARIGLIALQLPPVKPDAKKTQPTVLKILFPIDRLGNLTATLVL |
Ga0215015_110887852 | F001473 | GGAG | MESEYQTVGQMYERLRLMIRQRNDTGFRLAVTDAVLEPRNPFEPAHKRRPKSVVAIALILVLVLSLIFLYFSFHHAR |
Ga0215015_110887854 | F036729 | GAGG | MIQHSENSRREITNAEAGVVGAVLGFGLIALLLYLAVARYHIRKEPVSYTH |
⦗Top⦘ |