NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0215015_11097553

Scaffold Ga0215015_11097553


Overview

Basic Information
Taxon OID3300021046 Open in IMG/M
Scaffold IDGa0215015_11097553 Open in IMG/M
Source Dataset NameSoil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Colorado
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4301
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Czos Across The Us

Source Dataset Sampling Location
Location NameHuntingdon County, Pennsylvania, United States
CoordinatesLat. (o)40.6949Long. (o)-77.9199Alt. (m)Depth (m).9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006617Metagenome / Metatranscriptome368N
F008019Metagenome340Y
F010240Metagenome / Metatranscriptome306Y

Sequences

Protein IDFamilyRBSSequence
Ga0215015_110975532F008019GGALGVRKKIAVSIVLIIIVALAVWQFTSPQLLPPVGNKYSTSEPYSNRGNWTFPETIRYVKAYLTISISNVTFPRTGIGTDYSLVISDVNQTITNSIVKGLGVRVTGMNIQDSVDGSTSTWGNGNAVSDAAQATSIFFFKTSTNHMLRFTVTFQLYDLLPLGSIPDQTVTSSFNITQIVL
Ga0215015_110975533F006617GGALIFYRVTPALVVMRGEGRDEADNMVGAKPMLLWYVWIRLVDGAWHRLDEISKQLRLPSNAIEWAAKFLCDKGMAERGFEENEIRLSRGNARFEDAVRALSTGTKSSK
Ga0215015_110975535F010240N/ALLHQKLLANSLREHLGIYVLASLSNAFLTVSQYLAVSAAVASYLPVDPDTSALIASYGRGPGIFLALFLNSLVFQGILAVLIVTLALSTIVKTGSRWAYTFSGVIISGFVGYWLGAKFLVILEWISTLQNNRVDSSTPYSGLFWLGLAASICYVLMILFLRRSYDRLGENPTVTRSQ
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