Scaffold Ga0210247_101094

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0210247_101094

Scaffold Ga0210247_101094

Overview

Basic Information
Taxon OID	3300021050 Open in IMG/M
Scaffold ID	Ga0210247_101094 Open in IMG/M
Source Dataset Name	Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_16mM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	23310
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Source Dataset Sampling Location
Location Name	USA: Washington
Coordinates	Lat. (^o)	47.6519	Long. (^o)	-122.3113	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039966	Metagenome / Metatranscriptome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210247_1010941	F039966	N/A	MTEGQERVRLRAREGEAVEWTRRVAQRAGTLKDMMDDAPTEDGVYPVPIAAAELAVLREMCEADSMPARLEQCSISELFRLVEGASFLDAPGALNHAQCALATRLNGKRADELRELLGAMDDFGSAENRVAALAEPAFSPGGQLSVATVGSAAGPPALQPQPSLSGMAATEDAKEVALGMVDVGTLAELKGVNRSWLALARRVLCSRLSR

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