Scaffold Ga0206224_1038092

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0206224_1038092

Scaffold Ga0206224_1038092

Overview

Basic Information
Taxon OID	3300021051 Open in IMG/M
Scaffold ID	Ga0206224_1038092 Open in IMG/M
Source Dataset Name	Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos A1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	621
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Colorado
Coordinates	Lat. (^o)	38.96	Long. (^o)	-106.99	Alt. (m)		Depth (m)	50
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030006	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206224_10380923	F030006	GAGG	MPAPATVYTVGDFIRRVVDSLLHGECRGQFLCARCLVKLTKDNLDRSYAKPDIARVMDDIFATPGSLTLAPASTCALC

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