NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196978_1010936

Scaffold Ga0196978_1010936


Overview

Basic Information
Taxon OID3300021067 Open in IMG/M
Scaffold IDGa0196978_1010936 Open in IMG/M
Source Dataset NameSoil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20-13C
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1732
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.305Long. (o)-116.2547Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059318Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0196978_10109363F059318N/AVPKPLSTILAQIEQNQPPRVFLVGGNSEFLSEQAFHEIRDALVAKNPALTVETYEPGTDLASILDSYRTGSLFGGARLLIVPEVNAFVSAKEIASLYDKALADWKSAKTDRKRSSSAAKLLHVLGVAGCDLDMKDRAIADALGVALDATLTDMLAFCRNTGKKAGRGEDDAAMLMEAIARGGAAGAILLMRTGEVPRDSATTDLIDKVGAVIVTDLTREGFNAALDQAIASIASDANVKFEPPAVARLRQRLGIERILADKFSRDVPEIRGAVSEVERLVTLAGSGGRVTAAMVEREIAAIEGGARYELGSLFTEGKILEAVAKLRDLVAQGRREDPKMPVDMHYG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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