NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194056_10056415

Scaffold Ga0194056_10056415


Overview

Basic Information
Taxon OID3300021070 Open in IMG/M
Scaffold IDGa0194056_10056415 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L442-13m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1466
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.775Long. (o)-93.818Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081502Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0194056_100564152F081502N/AMNSASRMSTKEKQFSLNRGASRNNLLSVTAALFAALLCAQAGPDGHWESDITGDGPQRIRVTLDLAKNAKSEWLASMGLPSENKTGLVVKDLTVDGKSVKFVALELMSARFDLTLEPNGKMKGTISGAGAQPVEFKRTGEAKVELMPASPAVSKELEGDWEGSLNSPNGAFRMVFHFKNQPDKTVMTTFDTPNATNLPLNDVKQTGQKVEFGMRIAHGTFQGSLNKAGTELAGQFTHEANSVPMTLRKKSTQPAK
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