NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210378_10143493

Scaffold Ga0210378_10143493


Overview

Basic Information
Taxon OID3300021073 Open in IMG/M
Scaffold IDGa0210378_10143493 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)923
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9197Long. (o)-106.9492Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055850Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0210378_101434931F055850N/AQRGELTTRRAPSGFDLEVAAHLLSDPPDGRLAELGPDADLVYLRTADGAAAVGKLQDGSLRRLVPAGWRSPGPPRHAADGSVLGVCGYRLGGDRLPAVTDARSWVLDGSGERLATLPGCLYDVAADGASALVADPAEGRRAGPVPGREFLRRPPVGASDQLTRGLRLWRRDGSFHPVLGFADVVRVFRTVQPGVDPRGLVVVTAVLGPDGRQALVRVVDTLADVDPRTGREVEVLAVVDLQRGRAEPAPEHLPGRFAFLPTGGWALTGGAGTATYLPSDRPPQLLRSGIAGDGVYAIEPSPDGAWLL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.