NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194044_10172916

Scaffold Ga0194044_10172916


Overview

Basic Information
Taxon OID3300021074 Open in IMG/M
Scaffold IDGa0194044_10172916 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L442-17m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)849
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.775Long. (o)-93.818Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079531Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0194044_101729162F079531AGGAGGMRNISKALVASLALAAAAPAAAQYTFTEPGQAPQPMLQMSSGWNNVARVNVGVGFYNSGWATCYYGWYYGTCTAGSYTGYIPFLVGPQVDLNLGGMNNISVGFTVGLGSVTQTWTSGSGQICPGGTVPGGGVCSASANVTLWEPTLDYVAKFGPPSQDTVGRFRIGGGMYIGPNSTLGGAFRIGGGASFLSASRLGVGLD
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