NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210382_10005487

Scaffold Ga0210382_10005487


Overview

Basic Information
Taxon OID3300021080 Open in IMG/M
Scaffold IDGa0210382_10005487 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4135
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049297Metagenome / Metatranscriptome147N
F056458Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0210382_100054872F049297AGGAMTAERDRTMPHDDFEDTLPAIQTIEKFAGRLPEGDVEGHIRRSAHELTLAGEQRSGVEAACERLTQAVRQLDEHNTTGRLRRDFENAAPSVSRLLEAIQEQLVPALKRAGYQV
Ga0210382_100054873F056458AGAAGMSMSFNRTAIIPVWLVVFGLFALFGSPMTFATGVVVLVVGVALTIMLVLWKGPSRDRGDDAPDPPRVTLLSGDFVPNLWPDSGFRNSRQRGARGRIPQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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