NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210382_10010777

Scaffold Ga0210382_10010777


Overview

Basic Information
Taxon OID3300021080 Open in IMG/M
Scaffold IDGa0210382_10010777 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3101
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005023Metagenome / Metatranscriptome414Y
F030218Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0210382_100107771F005023GAGMRHTALTLGLTALLATPAAAQWLGEPMWNNPKAGTGFTIYGDYSQPNNNAGGGNAFGGRLALGAGTFTLTGGVSSWKADGASERITTFGGTAAFRLMGGSLIPVAVNLQLGGGHSLDIKSSTTALPVETTLRAAVGLSVPLPTPGVSVAPYVSPGIRYHHYSSATPGARDHETNVGWVIGGNLGFGPIGIHVAYDSEKFDDGTRHG
Ga0210382_100107772F030218AGGMRAALTVALSAFLVTPAAAQWLGMPSWNNPKGGTGVTVSGDFGRPNADAGKGNAFGGRVALGLGTLSLTAGVASWKPDNFDARATSYGGTGAFRLIGGSLLPVAVNLQVGAAHSGESASGPDTSQAQTTVSGAVGLSVPLPTPGISIEPYISPGIRYHKASNLPAGISDHQTNVGWVIGANLSFGLLGIHLAYDTEKFDNGVTQSVFGIGAHVGLKLPVGM
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.