Scaffold Ga0210379_10063688

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0210379_10063688

Scaffold Ga0210379_10063688

Overview

Basic Information
Taxon OID	3300021081 Open in IMG/M
Scaffold ID	Ga0210379_10063688 Open in IMG/M
Source Dataset Name	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1490
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9208	Long. (^o)	-106.9484	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F100794	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210379_100636883	F100794	N/A	RGQCCFRCGEDAKTDTDVSLRRQPPGAPFAVSDGTSYAERDDVRSLVLLAFCLAALAVSRPAWCAQAARLTSGARIRLDAPSTGGRLTGTLVALESDTLVMDEDGQPAGLRLIILTDSIARLEVRRERAMTLEGATLGLLGGTLLALVASPECVDENGESTALACLAYKVSPELKTRITVLGAVGALVGVIVGSETKQRTWAPVNLNRLDVGPAPGGGLSLGVRIPF

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