NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10000160

Scaffold Ga0206677_10000160


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10000160 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)59892
Total Scaffold Genes72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (22.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005010Metagenome415Y
F006240Metagenome / Metatranscriptome378Y
F010650Metagenome / Metatranscriptome301Y
F060337Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0206677_1000016011F005010GAGMVRNYLRKKRHIRETQKFLDMLVIDNTNLSIQASRFGWTNEIQKSITNNAMLIRKYQRRLRLIMM
Ga0206677_1000016013F006240N/AMAYLDNKEHKHIIDCVLHQNAQLFQNLGKDSSRSEYEKAKIAERQKLRRIRDIDPEKIDRLIKDSLDD
Ga0206677_1000016016F060337N/AMKIDYNEVTLILPKPPSLNKWYSGKHWSIRKKQKESYSASIKDQLERIDKFTMDRFKVDVEYNCRYDVDNAITCVKFLADYLRGDGYVVDDTPKYFFSQSTTFNQDLNKDEFKATIRCYGYSTRE
Ga0206677_100001606F010650N/AMSKMKQFLRIANARLRKVYPNKTQRKAWAANMWRRYVERQNIERDL
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