NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10000313

Scaffold Ga0206677_10000313


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10000313 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45530
Total Scaffold Genes117 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (24.79%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005287Metagenome / Metatranscriptome406Y
F014724Metagenome / Metatranscriptome260Y
F029710Metagenome / Metatranscriptome187Y
F045676Metagenome / Metatranscriptome152Y
F071123Metagenome / Metatranscriptome122Y
F086827Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0206677_10000313114F005287N/AMKIKSSDIIYSEHNYDECFEYTDGSGRVPDGTAVGYEVDSNSPTRILILFNDITYSKYDHQYWDNYELENDVDRIVIP
Ga0206677_1000031325F014724AGGAGMKEELKAIKHSIDGLSDEMLEHRRHANMEDLVKVMKSIDESLCSIRFGIADLVQEKKMQNELTSSLR
Ga0206677_1000031338F071123N/AMDDNDTNNYLEYWMENDPFFSQTLGNNNNIVEGVEHYSDRGVPRTAVSLNENLVLLFPPYQTGIDYSQIDYAPK
Ga0206677_100003138F045676N/AMSAERVPYPELDCALAMSKALGNLNFLVNRTKEEWSESFTTAVAIRDAYDALIDAQKEYDKVLTLLRESNTLNT
Ga0206677_1000031383F029710N/AMNTKVQSWLTIRQEDDEDVWSAPIMWLDDESEYDLFPSDDLNIDWVEEMDKEGAPILEGDSLGRDICIEVTCPSKKLDKRRAVGYNIDFEWN
Ga0206677_1000031388F086827AGGAVCTELEQKYKDQILEKFLDHAKKVEADHDVKTDGDNTDYWNALKLDDGSFVDFNFHMMSEWDDLDRSWTCEVYSVDPPTKNNEHYSINMEHTLLLAFYHPETQKLEIED
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