NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10000786

Scaffold Ga0206677_10000786


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10000786 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30172
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (79.31%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004144Metagenome / Metatranscriptome451Y
F005433Metagenome / Metatranscriptome401Y
F089431Metagenome / Metatranscriptome109N
F099420Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0206677_1000078612F004144GGAMLKWFKESVHHLKVETGWGYWYHLWHSFKNSWSLIIIAFKSIAHGIFPFLWKADAPKGVIRMYHQIMRIQHIKDMDELRKQPKNERYKSTTTTE
Ga0206677_1000078614F089431N/AMKQKTDKNYYSGDKIDDLVDAVKKAEHKHQEGNTQIDSAYKDEMYSNEQMEKHDKMDNIFKVDGVPSRWEHNKLRADWHFDTFADPHEETFVVPCRFEGDFSEAVQHALKTATEMTIGNYRQRNLSKQDKDLHDGEIQDVLLASGKEDVSSMYHDMVVRARFDKDGKNYFAKRNESPEYAILLRMIDALGVDVHQSRLHIQRLGQVTPIHIDQQMRYARPGWREVWTKAGADKNPLKLRRFLVMLQDWDYGHVWQFGNTYYHQYKAGECITYDWCNMPHGTANFGYTPRVTFQFTGFINDKVQHMIDNPDPNRVIKV
Ga0206677_1000078627F099420AGGMQLGNHHCTIDEVTYDRLELLDFVNQHKHNIMQFGDYMQYLSPEKREFKGRTGMNAIAVQKTEGKNLLDYPVIEKYVNMFNFKQPIAPRDIDLLHYDPGYSFHPHTDHYMWCGIMFPIMPEDAGEPISFYSRVGVTPERNVNYEKKYGWNDLDIEYNHYYSNKHPTLFNGMTVHGVPTIKRERIYLRIKVLGEKFEDVVEKLRNNNFVIDK
Ga0206677_100007869F005433AGGAGMSIRTRFEIETFVLGAHPTASRKAQVLTTELMQAREQQHPDLPVLEAIHKDFAAEHDIDALLANIEESEEEYWVARLSKLAAIDILTIGKVQPEHMNYMVALEDEAFAACVKQATAIAKQLNYEVQQVEAELQTELASEK
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