NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10003523

Scaffold Ga0206677_10003523


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10003523 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13124
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024651Metagenome / Metatranscriptome205Y
F043937Metagenome / Metatranscriptome155Y
F070097Metagenome / Metatranscriptome123Y
F071656Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0206677_1000352310F070097N/AMELQRIDENKMKWINIFFDTIYRYYCKGNSKVYQWDLQRELKFLRYMKDCGEYYDRDADRLNSIKNLYQHITNGTV
Ga0206677_1000352313F071656N/AMTDHEALSKQLHENQMANKSYRNLPQRIMMKRWEECGRDVHKFWNSIEWDSTWLRHDTEEEKYAKDVTREYNRHPFRKFIPKPKEYVEL
Ga0206677_1000352314F043937N/AMNEIKITQFKEWKNKPLTTGLWRPYEVEVGFIEDYIKRSGYEYNGIILF
Ga0206677_100035239F024651N/AMYNNATFVDKEQLKNLKKMDNFVKDNMVRFTEEVGMEVREVITRIIEKGHYYEGEAEVLNMIANEYNQYKKENR
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