NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0206677_10012908

Scaffold Ga0206677_10012908


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10012908 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5562
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001942Metagenome / Metatranscriptome613Y
F006845Metagenome / Metatranscriptome363Y
F012117Metagenome / Metatranscriptome283N
F013088Metagenome / Metatranscriptome274Y
F018155Metagenome / Metatranscriptome236Y
F034894Metagenome173N

Sequences

Protein IDFamilyRBSSequence
Ga0206677_1001290810F013088GGAGMNDKTKKALWIPEELHKDIKVFAITNNMNIESATQLLIKLGMCSYKENNNGSK
Ga0206677_1001290811F018155AGGAGMGQNSEAVEKRREELKAEKLDRTIEHYYFQKGAGKHYREIKYASGRVVRTDFDA
Ga0206677_1001290813F006845AGGMKSYKKQMDLNSYLLQEGFEEFCRESYERISLACEMLHIVNDEDYESFKERCYTQLETDYLNSIELTIH
Ga0206677_1001290814F012117GGAGMDILGGMSSSNEGQQVYLAFKTMQQQFFANGETPVEFQYLQLDPATFKSGWGRYTKADGFEYHWDDKFGVVSPKPEDDYKRAFSAWVFPQGAQHAYLWQRFTYAESSAFNNILGSFWNQMDSSSANLPVVKYEGSKPIQVGMGNSSELSFSFAKFAPRSAEFVIPSWYTDEEKPVEDTFKDPNAGLADKVQEMIDKNELSDDDIPF
Ga0206677_100129083F001942N/AMPKKTSDQHQANSRLGALGESLVQTFLLEYADFCFPTQEKHPADLCMELNNSMYTIQVKSRRATKEKKFVFAAENSRSMSDTYKNYSCDILAFVFFFDDQKRIMFKANMSSQNYFTFDKKIITDNMELDSLQETLDALNSVPVLNSII
Ga0206677_100129086F034894AGGAMNVTFNLMGGGELNIPSRAISGFYKDQYTSEVIVEVNGDEYKVRDSLDEVRYLLGLAT
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.