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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021085 Open in IMG/M |
| Scaffold ID | Ga0206677_10031679 Open in IMG/M |
| Source Dataset Name | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2962 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 36.7468 | Long. (o) | -122.0193 | Alt. (m) | Depth (m) | 30 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017050 | Metagenome / Metatranscriptome | 243 | N |
| F018269 | Metagenome | 236 | N |
| F085688 | Metagenome / Metatranscriptome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0206677_100316791 | F085688 | N/A | MDDDTYTILGCITKYKADDIRPYVESIEQTGFKGRKVMLVYDVPQETIDYLKSKGWDLFGGELQQHIILQRFRDLYKLLGSEIKGTVIWTDVKDVIFQKDPTDWIEHNMEDDILSFSECITFKNDPWACVNAGTSFPMEWEWLQNKTSYCAGTIVGDACYLRDLFIDIYRWSMTSSNPDQLSDQAAYNVLINLHHISDCVQTVKQEEGFVTQLGTVLVKKDEFKDVLLEPTPIVDENYIVKNQKGEP |
| Ga0206677_100316792 | F017050 | AGG | MSKLISGYWWAWKEIEAGKKSMQTLRKYYPDADLFINVDYEGDVDGYTKVGKELNATVTRNNFQLGYCGNFGDRDIGYDYWSKEKAVEWLRGVYDACTKTDSKYMMLFEEDDFVLKNISILDTDFSIAIHPTAPSPVRMRPNMIPKQFLDYSKEIGGIGDCPGYASGGGTIFNREHYMDSYERILDKFTDVYDEFCKINKIFGWEDFLFQYIFMLGGYEVTQNHDLCELWEVPNFEGFEILTGCKDPNLITL |
| Ga0206677_100316793 | F018269 | GAG | LVAKRYKMKIGINLVGVSYNNAITGGRLRNYEDAIENFFKYIIEPFRENGNDVQFYLYSYENEKQDKIVDDYTPCIKSQFVKPDYNKLGGGTQVSEGYKVMSVSYLNSLEQLKNQDLDLVISTRYDIKFLKNPFEEYNFDFDKMNFLWREPELKHLPIVNDTFLVFPYKMLDNVIDSIIEMEENPPHGKNIAMHNWYLPMVNQVGEDKVQWVDDEFRTAIQNELYILTRKA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |