NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10043092

Scaffold Ga0206677_10043092


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10043092 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2405
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011679Metagenome / Metatranscriptome288Y
F026890Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0206677_100430922F026890AGGAGMLYEVYQIQVSDEIHDYVNSNEGGHTGAAKKYPLYHAKMETMHGRGEGRKVNFKTEYFSHYTKVCEVDGRYNGLSNGDMDYTVKSKNEVFAILNQQYLDEDTMEDIVFDSHVSGFTMKSFVRDGKTIEYRNMHSLSVGDIIAEVPQVGYEVMDPSDIVKHTTYHMVDSYGFSDITNIISSTDIAVNRIAEAV
Ga0206677_100430923F011679GGAGGMIKERNTTVLSTDYQPTESLKRFIERCTGAKMTPVKGKEDSYWISGDSRGKYYEQKYYKIVFGPVTQVSYSNGRTEKSGYGFDIQTTGDLNGWQLMGEYRKMIKEAMANYKKESA
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