NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10057878

Scaffold Ga0206677_10057878


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10057878 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1977
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006845Metagenome / Metatranscriptome363Y
F012117Metagenome / Metatranscriptome283N
F013088Metagenome / Metatranscriptome274Y

Sequences

Protein IDFamilyRBSSequence
Ga0206677_100578781F012117N/AMEKYIMDILGGMSSSNESQQVYLAFKTSHQQFFANGETPVDFQYLQLDPATFKSGWGRYTKADGFEYAWDDKFGVVNPKPADDYKRAFSAWVMPQGAQHAYLWQRFTYAESSAFNSILGGFWNQMDASSDSLPVVKYEGSKPIQVGMGNSSELSFSFAKFAPRADGFVIPQWYIDQEAPVEDTFKSP
Ga0206677_100578782F006845N/AMDLNSYLLQEDFEDFCRKSFERIQIACDVFGITNDEDYYSFKERCYTQLETDYLNSIDKTIH
Ga0206677_100578786F013088N/AMDDKTKKALWIPEELHKEIKVFAIVNNMNIESATQLLLKLGMCSYKSEK
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