NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206683_10018688

Scaffold Ga0206683_10018688


Overview

Basic Information
Taxon OID3300021087 Open in IMG/M
Scaffold IDGa0206683_10018688 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4171
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011494Metagenome / Metatranscriptome290Y
F014551Metagenome262Y
F077389Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0206683_1001868810F014551N/AMRDMFKFEYNPARHEGEVNHGNHVYNYLGVIVDHFRNTTEGETFSGVTVEIHDNQGPTGQTRRFRWDRMVKAVNLVNMAQAIHGGRA
Ga0206683_100186887F011494N/AMEGFRANHAKNHKKKKEKKVRLLVDISPVSGILFCVMRKYSVVDEEGVVRSFTQNVGDADHSALNNAIDLAQRAGEDVVEHLADGTRVVAWSIDDATDEPWDGFRSDAEADGDALASAGFGTDEDYGGCCDW
Ga0206683_100186889F077389GGAGGMKKAKNYKEAMLRYFYAPMVGAWLSVAVIAGFTTGFDEVLRYWRVAALNLF
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