NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10000010

Scaffold Ga0210404_10000010


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10000010 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)437867
Total Scaffold Genes415 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)310 (74.70%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000136Metagenome / Metatranscriptome1961Y
F000238Metagenome / Metatranscriptome1494Y
F000359Metagenome / Metatranscriptome1236Y
F000912Metagenome / Metatranscriptome839Y
F000954Metagenome / Metatranscriptome822Y
F001885Metagenome / Metatranscriptome622Y
F046602Metagenome / Metatranscriptome151Y
F049279Metagenome / Metatranscriptome147Y
F052740Metagenome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0210404_10000010126F046602GAGMANSLSAEKAIAGVRIATSVFFLLFGEYKLAGPAFAHCGFQHYLHEYIATSVIPSISLDG
Ga0210404_1000001016F049279GGAMTSLRQSLRDTNSRLHFWLATTVPAAGQPASITPESMAALLSELLHAGASLRVEPAPVKGHDPEWDAELAIYVRHVEQLRELLPEIHRQLLAERAQIESQRTRVQFAAEWARASRQTL
Ga0210404_10000010177F001885GGAGMEAASLATIRELNAIVANKGYGRDLLYHDSDSHFVLLRYWNSEQARSAAQEDPEVLRCWARLGNEIQILKVYEKLEEIGV
Ga0210404_10000010233F052740GAGGMAISENPAVIAFLGAAWKSVGGQLLASGVILLSGHQDLGLRAHMGAALGFFIALAVGISALITAIRADLPYAVAICAVVLCSELVLILRWWLRRTSA
Ga0210404_10000010276F000136GAGGMAKAAKLKILYGEGDADVQVATSAAFEKAGHSVEQAVGRKAVQAALDKGRFDLVVLGPTLSRNDRHHLPYMVKKAQAETSVLVMHADGSRHPYVDACTDTGASVENVLARIESMAIAGMMPAAAGAAAGR
Ga0210404_10000010364F000238N/AMPPTPRPPRWYAIPIRVLLVTFIGTLIAFAASLLLGIAGLVILSALRHVNPNMTIAYRLIALPAAVVAGSIIFVLALAMEIRHYRQSKTLNSIERLS
Ga0210404_10000010380F000359GGAGMSGQVILYFEDQGDALRFALAAGSVMAGEGAPVTDNLIQETARVSRIRLDAANAGKIRKPAPDRVA
Ga0210404_1000001051F000954GGALTETHFWPKVCGGVLMGLPPSPVKKGLLIAVAVVLAPFLLAGLVALATGDWQTIGSTASGDQVLVSSVTARKNGLRSAWVRVEYKEPVKLPQGGPFVELRARVRFNCAAGGVVANSEWFYSRDRSGKLVVSKKTRRDDQFGQMAEGGFGDMTRDFVCRQK
Ga0210404_1000001096F000912GGAMALDGFVRCTCVREGKAKPHPFPERLTFDERGEPSLTGEPTEEEWEAHDQWLASSCEHEGFLLALFLGNITRVGNIRSFLKHLQGTPGPRFPILLEKVLYDGTHTGDHVPIKLSPALLKEVDTVLQSRDILSDSEKEFFDNMKQLCEASIQTGNPVMF
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