NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10000016

Scaffold Ga0210404_10000016


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10000016 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)341892
Total Scaffold Genes267 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)214 (80.15%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009834Metagenome / Metatranscriptome312Y
F011163Metagenome / Metatranscriptome294Y
F039510Metagenome / Metatranscriptome163Y
F084499Metagenome112Y
F095374Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0210404_10000016114F039510N/AMNGPSVDKLRDELERLMKEHIEATERRTFLGITPEEVLQEKERLERIREVSAEFLHALKKLQT
Ga0210404_10000016176F084499AGGAGGMLEIVWRNPQPPAKRMLRIEEVWADESAVAPMWVVFYHTLLDSGWAENEFRLLVNRNVQGSIAV
Ga0210404_10000016184F095374GGAGMSTRPSFAVLFALLLSCAALSQDQIKDQLKIAPLPYDPFELATGPTVVPDTPQKRELMLALLERARQNHGMHAPGSPAFAMKVSFNSTGTSRYTGFGEMEETWMSPSTFRWSARLGDYSQLRIYSDGAAYDDKPRGPIPLRIQMVRQSVFWPVTGRFAPALIRMATAKWQGSEVACMLISGAANDASATPGRRWEETEYCIDPQTGLLRTYSEAPGIYNVYDYSEKFEFHGHTLARQISIVEDGVIVLQIHLDSLADAANADPDQFVPTKKMISHGPGDILVGPFRFPQSVATPAGRSGVIQPVIVHAVLDKKGHVVEAEALQHSDTLLADAALAIVQRSNYAKRDQGRPVQREAFINVQFIPQ
Ga0210404_10000016247F011163AGGAGVGFGMEMLFVLMLGLLILGPKRLHTILVHVSQAKAELQNATRGLRSQLAAELDAAPEPRRTECAHVLVGDCEFCATFKSEAEFSEPAEDALIGS
Ga0210404_10000016260F009834AGGAGGVIKISKSRFVNLSSMALALLTTVLLVTSGASAKERKAKASDNQAHVVAHIPFEGLSDVDMAIQKKVNDKYYLYVQHSKEQGISIVDISKPDHPKSVGMVPWPEPTASSRMTVTGDLAIISETDVARRSSSDEELVLWDLSDPAAPRVVQKFEGVVKWLQDQRDFIYVLNAEGLWIVSKPMDTRPNQTDSSESYGG
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