NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10000046

Scaffold Ga0210404_10000046


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10000046 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)108419
Total Scaffold Genes114 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)84 (73.68%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003084Metagenome / Metatranscriptome508Y
F004032Metagenome / Metatranscriptome456Y
F006353Metagenome / Metatranscriptome375Y
F064445Metagenome / Metatranscriptome128Y
F078942Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0210404_10000046100F006353GGAGGMRWRMRWRIKVRLLVPVVFSIALPLAAQSTATSVYAESFRQGATRVVEESFEAKLTPQNSAYRERIKDLHGADRYTFSITPQGPEGDTKITSWQVKLADLHHPIYDNVLLPSQVPSDNPQGDVQDALWRLEPGSFARVPVGAKRIIKVDSFYVVLQVKAYHFTPPDSPYLDSMTVGVAFTNTDPREAHTK
Ga0210404_10000046111F004032AGGGGGMNPGSSISLNSKAWRDLYKAALFEVDKTRLPDRIAQAEEALALRARELFHVAGDNIEEGEALDDAMYALHALRSTSQINHRLNAARGAVA
Ga0210404_1000004619F078942AGGMFLTSGGSVLGAAEMLSPVSWRLQPFKFVGLRDDDQRRLQAAIQSSLDQNRRDHGQMERFRAW
Ga0210404_1000004667F003084GGAGGMSAKQTVIAVLAVTMSILGATAAAQDEKNELTGILGRTIISDQGIPGASYFNPFVRSGKGLTFEVNYARRLFGTPVYAVSGEVPAVFNLDEDLNSGANVVPIDYKQIFVTPAARVNLFPDTAVSPWVSVGGGVGRFSENKTLIYGGKNPASSSTTGVLQMGLGLDVRVWHRFSIRGQVRDFWSGTPDLPLAATGKSRQHNFFVGGGVIWHF
Ga0210404_1000004669F064445GGAGGMQTVPSGSNIPNIKIRVSGKLFRGHLSYLHQLVRAAIACDLWALLDLAQLEELDRAALLYLMRGEGQSFGIVACPNFIREWISHESTFRVA
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